Amborella_trichopoda
| References | Reference_title |
|---|---|
| The Amborella Genome and the Evolution of Flowering Plants |
| Database_name | Phytozome |
|---|
Euryale_ferox
| References | Reference_title |
|---|---|
| Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution |
| Database_name | CoGe |
|---|
Nymphaea_colorata
| References | Reference_title |
|---|---|
| The water lily genome and the early evolution of flowering plants |
| Database_name | Phytozome |
|---|
Magnolia_biondii
| References | Reference_title |
|---|---|
| The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids |
| Database_name | Dryad |
|---|
Cinnamomum_kanehirae
| References | Reference_title |
|---|---|
| Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution |
| Database_name | Phytozome |
|---|
Aristolochia_contorta
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of Aristolochia contorta provides insights into the biosynthesis of benzylisoquinoline alkaloids and aristolochic acids |
| Database_name | CoGe |
|---|
Aristolochia_fimbriata
| References | Reference_title |
|---|---|
| Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome |
| Database_name | NGDC |
|---|
Saururus_chinensis
| References | Reference_title |
|---|---|
| The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids |
| Database_name | NGDC |
|---|
Chloranthus_spicatus
| References | Reference_title |
|---|---|
| Chloranthus genome provides insights into the early diversification of angiosperms |
| Database_name | CNGB |
|---|
Lemna_minor
| References | Reference_title |
|---|---|
| The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications |
| Database_name | CoGe |
|---|
Spirodela_polyrhiza
| References | Reference_title |
|---|---|
| Plant evolution and environmental adaptation unveiled by long-read whole-genome sequencing of Spirodela |
| Database_name | Phytozome |
|---|
Lemna_minuta
| References | Reference_title |
|---|---|
| The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness |
| Database_name | CoGe |
|---|
Spirodela_intermedia
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries |
| Database_name | NCBI |
|---|
Zostera_marina
| References | Reference_title |
|---|---|
| The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea |
| Database_name | Phytozome |
|---|
Amorphophallus_konjac
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of Amorphophallus konjac provides insights into konjac glucomannan biosynthesis |
| Database_name | Figshare |
|---|
Avena_eriantha
| References | Reference_title |
|---|---|
| Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species |
| Database_name | CoGe |
|---|
Avena_atlantica
| References | Reference_title |
|---|---|
| Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species |
| Database_name | CoGe |
|---|
Bonia_amplexicaulis
| References | Reference_title |
|---|---|
| Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos |
| Database_name | Bamboo genome database |
|---|
Brachypodium_distachyon
| References | Reference_title |
|---|---|
| Genome sequencing and analysis of the model grass Brachypodium distachyon |
| Database_name | Phytozome |
|---|
Brachypodium_hybridum
| References | Reference_title |
|---|---|
| Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors |
| Database_name | Phytozome |
|---|
Brachypodium_stace
| References | Reference_title |
|---|---|
| Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors |
| Database_name | Phytozome |
|---|
Cenchrus_purpureus
| References | Reference_title |
|---|---|
| The elephant grass (Cenchrus purpureus) genome provides insights into anthocyanidin accumulation and fast growth |
| Database_name | NGDC |
|---|
Cleistogenes_songorica
| References | Reference_title |
|---|---|
| The genome of Cleistogenes songorica provides a blueprint for functional dissection of dimorphic flower differentiation and drought adaptability |
| Database_name | NGDC |
|---|
Coix_lacrymajobi
| References | Reference_title |
|---|---|
| Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family |
| Database_name | Coix lacryma-jobi Genome DB |
|---|
Dichanthelium_oligosanthes
| References | Reference_title |
|---|---|
| The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes |
| Database_name | NCBI |
|---|
Eragrostis_curvula
| References | Reference_title |
|---|---|
| A high-quality genome of Eragrostis curvula grass provides insights into Poaceae evolution and supports new strategies to enhance forage quality |
| Database_name | NCBI |
|---|
Guadua_angustifolia
| References | Reference_title |
|---|---|
| Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos |
| Database_name | Bamboo genome database |
|---|
Miscanthus_sinensis
| References | Reference_title |
|---|---|
| Genome biology of the paleotetraploid perennial biomass crop Miscanthus |
| Database_name | Phytozome |
|---|
Oryza_brachyantha
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_rufipogon
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_sativa
| References | Reference_title |
|---|---|
| Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green Revolution |
| Database_name | Phytozome |
|---|
Panicum_hallii
| References | Reference_title |
|---|---|
| The genomic landscape of molecular responses to natural drought stress in Panicum hallii |
| Database_name | Phytozome |
|---|
Panicum_virgatum
| References | Reference_title |
|---|---|
| Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass |
| Database_name | Phytozome |
|---|
Phyllostachys_edulis
| References | Reference_title |
|---|---|
| Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis) |
| Database_name | GigaDB |
|---|
Saccharum_spontaneum
| References | Reference_title |
|---|---|
| Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. |
| Database_name | The Ming Laboratory |
|---|
Saccharum_hybrid
| References | Reference_title |
|---|---|
| A mosaic monoploid reference sequence for the highly complex genome of sugarcane |
| Database_name | sugarcane genome hub |
|---|
Secale_cereale
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential |
| Database_name | e!DAL |
|---|
Setaria_italica
| References | Reference_title |
|---|---|
| Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential |
| Database_name | Phytozome |
|---|
Setaria_viridis
| References | Reference_title |
|---|---|
| Reference Genome for the Highly Transformable Setaria viridis ME034V |
| Database_name | Phytozome |
|---|
Sorghum_bicolor
| References | Reference_title |
|---|---|
| A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping |
| Database_name | Phytozome |
|---|
Triticum_aestivum
| References | Reference_title |
|---|---|
| Multiple wheat genomes reveal global variation in modern breeding |
| Database_name | EnsemblPlants |
|---|
Triticum_turgidum
| References | Reference_title |
|---|---|
| Durum wheat genome highlights past domestication signatures and future improvement targets |
| Database_name | NCBI |
|---|
Triticum_urartu
| References | Reference_title |
|---|---|
| Genome sequence of the progenitor of wheat A subgenome Triticum urartu |
| Database_name | MBKBASE |
|---|
Zoysia_japonica
| References | Reference_title |
|---|---|
| Sequencing and comparative analyses of the genomes of zoysiagrasses |
| Database_name | Zoysia Genome Database |
|---|
Zoysia_matrella
| References | Reference_title |
|---|---|
| Sequencing and comparative analyses of the genomes of zoysiagrasses |
| Database_name | Zoysia Genome Database |
|---|
Zoysia_pacifica
| References | Reference_title |
|---|---|
| Sequencing and comparative analyses of the genomes of zoysiagrasses |
| Database_name | Zoysia Genome Database |
|---|
Kobresia_littledalei
| References | Reference_title |
|---|---|
| Genome sequence of Kobresia littledalei, the first chromosome-level genome in the family Cyperaceae |
| Database_name | NCBI |
|---|
Ananas_comosus
| References | Reference_title |
|---|---|
| The draft genome of MD-2 pineapple using hybrid error correction of long reads |
| Database_name | Phytozome |
|---|
Leersia_perrieri
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Olyra_latifolia
| References | Reference_title |
|---|---|
| Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos |
| Database_name | Bamboo genome database |
|---|
Oryza_barthii
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_glaberrima
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_glumaepatula
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_meridionalis
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_nivara
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Oryza_punctata
| References | Reference_title |
|---|---|
| Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza |
| Database_name | CyVerse Data Commons |
|---|
Achnatherum_splendens
| References | Reference_title |
|---|---|
| The genome sequence provides insights into salt tolerance of Achnatherum splendens (Gramineae), a constructive species of alkaline grassland |
| Database_name | NGDC |
|---|
Dendrocalamus_latiflorus
| References | Reference_title |
|---|---|
| Allele-aware chromosome-scale assembly of the allopolyploid genome of hexaploid Ma bamboo (Dendrocalamus latiflorus Munro) |
| Database_name | SelfDB |
|---|
Echinochloa_colona
| References | Reference_title |
|---|---|
| Genomic insights into the evolution of Echinochloa species as weed and orphan crop |
| Database_name | NGDC |
|---|
Echinochloa_crusgalli
| References | Reference_title |
|---|---|
| Genomic insights into the evolution of Echinochloa species as weed and orphan crop |
| Database_name | NGDC |
|---|
Echinochloa_oryzicola
| References | Reference_title |
|---|---|
| Genomic insights into the evolution of Echinochloa species as weed and orphan crop |
| Database_name | NGDC |
|---|
Eremochloa_ophiuroides
| Database_name | Figshare |
|---|
Phragmites_australis
| References | Reference_title |
|---|---|
| Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed) |
| Database_name | CoGe |
|---|
Sporobolus_pyramidalis
| References | Reference_title |
|---|---|
| A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species |
| Database_name | CoGe |
|---|
Sporobolus_stapfianus
| References | Reference_title |
|---|---|
| A comparative genomics examination of desiccation tolerance and sensitivity in two sister grass species |
| Database_name | CoGe |
|---|
Pennisetum_purpureum
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly provides insights into speciation of allotetraploid and massive biomass accumulation of elephant grass (Pennisetum purpureum Schum.) |
| Database_name | Figshare |
|---|
Hordeum_marinum
| References | Reference_title |
|---|---|
| The genome and gene editing system of sea barleygrass provide a novel platform for cereal domestication and stress tolerance studies |
| Database_name | NGDC |
|---|
Lolium_rigidum
| References | Reference_title |
|---|---|
| Rounding up the annual ryegrass genome: High-quality reference genome of Lolium rigidum |
| Database_name | NCBI |
|---|
Paspalum_vaginatum
| References | Reference_title |
|---|---|
| Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass |
| Database_name | phytozome |
|---|
Panicum_miliaceum
| References | Reference_title |
|---|---|
| Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome |
| Database_name | Zenodo |
|---|
Areca_catechu
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of areca palm (Areca catechu) |
| Database_name | CNSA |
|---|
Calamus_simplicifolius
| References | Reference_title |
|---|---|
| The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana) |
| Database_name | GigaDB |
|---|
Daemonorops_jenkinsiana
| References | Reference_title |
|---|---|
| The chromosome-level genome assemblies of two rattans (Calamus simplicifolius and Daemonorops jenkinsiana) |
| Database_name | GigaDB |
|---|
Ensete_ventricosum
| References | Reference_title |
|---|---|
| A Draft Genome Sequence for Ensete ventricosum, the Drought-Tolerant “Tree Against Hunger†|
| Database_name | NCBI |
|---|
Musa_schizocarpa
| References | Reference_title |
|---|---|
| Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps |
| Database_name | genoscope |
|---|
Ensete_glaucum
| References | Reference_title |
|---|---|
| A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae |
| Database_name | Banana genome hub |
|---|
Musa_acuminata
| References | Reference_title |
|---|---|
| Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana) |
| Database_name | Banana genome hub |
|---|
Musa_balbisiana
| References | Reference_title |
|---|---|
| A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids |
| Database_name | Banana genome hub |
|---|
Musa_itinerans
| References | Reference_title |
|---|---|
| Whole genome sequencing of a banana wild relative Musa itinerans provides insights into lineage-specific diversification of the Musa genus |
| Database_name | Banana genome hub |
|---|
Wurfbainia_villosa
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and functional characterization of terpene synthases provide insights into the volatile terpenoid biosynthesis of Wurfbainia villosa |
| Database_name | Figshare |
|---|
Apostasia_shenzhenica
Phalaenopsis_aphrodite
| References | Reference_title |
|---|---|
| Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding |
| Database_name | Phalaenopsis aphrodite Genome Resources |
|---|
Asparagus_officinalis
| References | Reference_title |
|---|---|
| The asparagus genome sheds light on the origin and evolution of a young Y chromosome |
| Database_name | Phytozome |
|---|
Asparagus_setaceus
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant Asparagus setaceus |
| Database_name | Dryad |
|---|
Allium_cepa
| References | Reference_title |
|---|---|
| Insights from the first genome assembly of Onion (Allium cepa) |
| Database_name | Onion Genome Sequencing |
|---|
Allium_sativum
| References | Reference_title |
|---|---|
| A Chromosome-Level Genome Assembly of Garlic (Allium sativum) Provides Insights into Genome Evolution and Allicin Biosynthesis |
| Database_name | Figshare |
|---|
Cymbidium_ensifolium
| References | Reference_title |
|---|---|
| The Cymbidium genome reveals the evolution of unique morphological traits |
| Database_name | CNGB |
|---|
Dendrobium_chrysotoxum
| References | Reference_title |
|---|---|
| Chromosome-scale assembly of the Dendrobium chrysotoxum genome enhances the understanding of orchid evolution |
| Database_name | NCBI |
|---|
Dendrobium_nobile
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change |
| Database_name | NCBI |
|---|
Gastrodia_menghaiensis
| References | Reference_title |
|---|---|
| The Gastrodia menghaiensis (Orchidaceae) genome provides new insights of orchid mycorrhizal interactions |
| Database_name | Figshare |
|---|
Papilionanthehookeriana_xteres
| References | Reference_title |
|---|---|
| Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral traits |
| Database_name | NA |
|---|
Dioscorea_dumetorum
| References | Reference_title |
|---|---|
| High Contiguity de novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing |
| Database_name | Universität Bielefeld |
|---|
Dioscorea_alata
| References | Reference_title |
|---|---|
| Chromosome evolution and the genetic basis of agronomically important traits in greater yam |
| Database_name | Phytozome |
|---|
Cremastra_appendiculata
| References | Reference_title |
|---|---|
| A draft genome of the medicinal plant Cremastra appendiculata (D. Don) provides insights into the colchicine biosynthetic pathway |
| Database_name | CNGB |
|---|
Amaranthus_hypochondriacus
| References | Reference_title |
|---|---|
| The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly |
| Database_name | CoGe |
|---|
Beta_patula
| References | Reference_title |
|---|---|
| Genomes of the wild beets Beta patula and Beta vulgaris ssp. Maritima |
| Database_name | The Beta vulgaris Resource |
|---|
Beta_vulgaris
| References | Reference_title |
|---|---|
| Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima |
| Database_name | Phytozome |
|---|
Chenopodium_pallidicaule
| References | Reference_title |
|---|---|
| The genome of Chenopodium pallidicaule: An emerging Andean super grain |
| Database_name | CoGe |
|---|
Chenopodium_quinoa
| References | Reference_title |
|---|---|
| A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value |
| Database_name | Phytozome |
|---|
Spinacia_oleracea
| References | Reference_title |
|---|---|
| Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions |
| Database_name | Phytozome |
|---|
Aldrovanda_vesiculosa
| References | Reference_title |
|---|---|
| Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory |
| Database_name | CARNIVOROM |
|---|
Dionaea_muscipula
| References | Reference_title |
|---|---|
| Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory |
| Database_name | CARNIVOROM |
|---|
Drosera_spatulata
| References | Reference_title |
|---|---|
| Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory |
| Database_name | CARNIVOROM |
|---|
Simmondsia_chinensis
| References | Reference_title |
|---|---|
| The genome of jojoba (Simmondsia chinensis): A taxonomically isolated species that directs wax ester accumulation in its seeds |
| Database_name | NGDB |
|---|
Fagopyrum_esculentum
| References | Reference_title |
|---|---|
| Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes |
| Database_name | BGDB |
|---|
Fagopyrum_tataricum
| References | Reference_title |
|---|---|
| The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance |
| Database_name | MBKBASE |
|---|
Polygonum_cuspidatum
| References | Reference_title |
|---|---|
| Assembly and Annotation of a Draft Genome of the Medicinal Plant Polygonum cuspidatum |
| Database_name | NGDC |
|---|
Carnegiea_gigantea
| References | Reference_title |
|---|---|
| Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti |
| Database_name | Dryad |
|---|
Amaranthus_cruentus
| Database_name | SelfDB |
|---|
Atriplex_hortensis
| References | Reference_title |
|---|---|
| A Chromosome-Scale Assembly of the Garden Orach (Atriplex hortensis L.) Genome Using Oxford Nanopore Sequencing |
| Database_name | Coge |
|---|
Hylocereus_undatus
| References | Reference_title |
|---|---|
| A chromosome-scale genome sequence of pitaya (Hylocereus undatus) provides novel insights into the genome evolution and regulation of betalain biosynthesis |
| Database_name | PitayaGD |
|---|
Mesembryanthemum_crystallinum
| References | Reference_title |
|---|---|
| High-quality ice plant reference genome analysis provides insights into genome evolution and allows exploration of genes involved in the transition from C3 to CAM pathways |
| Database_name | SelfDB |
|---|
Haloxylon_ammodendron
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron |
| Database_name | Figshare |
|---|
Malania_oleifera
| References | Reference_title |
|---|---|
| Genome sequence of Malania oleifera, a tree with great value for nervonic acid production |
| Database_name | GigaDB |
|---|
Actinidia_chinensis
| References | Reference_title |
|---|---|
| A high-quality Actinidia chinensis (kiwifruit) genome |
| Database_name | NCBI |
|---|
Aegiceras_corniculatum
| References | Reference_title |
|---|---|
| Chromosome-level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi-C sequencing technologies |
| Database_name | CNGB |
|---|
Primula_veris
| References | Reference_title |
|---|---|
| The draft genome of Primula veris yields insights into the molecular basis of heterostyly |
| Database_name | Dryad |
|---|
Diospyros_lotus
| References | Reference_title |
|---|---|
| The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants |
| Database_name | Bioinformatics & Systems Biology |
|---|
Clethra_arborea
| References | Reference_title |
|---|---|
| Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea |
| Database_name | Dryad |
|---|
Roridula_gorgonias
| References | Reference_title |
|---|---|
| Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea |
| Database_name | Dryad |
|---|
Camellia_oleifera
| References | Reference_title |
|---|---|
| The genome of oil-Camellia and population genomics analysis provide insights into seed oil domestication |
| Database_name | Zenodo |
|---|
Gilia_yorkii
| References | Reference_title |
|---|---|
| Chromosome-Scale Genome Assembly of Gilia yorkii Enables Genetic Mapping of Floral Traits in an Interspecies Cross |
| Database_name | CoGe |
|---|
Rhododendron_henanense
| References | Reference_title |
|---|---|
| The chromosome-scale genome assembly, annotation and evolution of Rhododendron henanense subsp. Lingbaoense |
| Database_name | RPGD |
|---|
Rhododendron_ovatum
| References | Reference_title |
|---|---|
| High-quality evergreen azalea genome reveals tandem duplication-facilitated low-altitude adaptability and floral scent evolution |
| Database_name | RPGD |
|---|
Rhododendron_simsii
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly of a parent species of widely cultivated azaleas |
| Database_name | RPGD |
|---|
Rhododendron_williamsianum
| References | Reference_title |
|---|---|
| The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae) |
| Database_name | RPGD |
|---|
Synsepalum_dulcificum
| References | Reference_title |
|---|---|
| The Chromosome-Level Genome of Miracle Fruit (Synsepalum dulcificum) Provides New Insights Into the Evolution and Function of Miraculin |
| Database_name | CNGB |
|---|
Vitellaria_paradoxa
| References | Reference_title |
|---|---|
| Genomic Resources to Guide Improvement of the Shea Tree |
| Database_name | ORCAE |
|---|
Rhododendron_delavayi
| References | Reference_title |
|---|---|
| The draft genome assembly of Rhododendron delavayi Franch. var. delavayi |
| Database_name | GigaDB |
|---|
Rhododendron_molle
| References | Reference_title |
|---|---|
| Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color |
| Database_name | NGDC |
|---|
Rhododendron_griersonianum
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and population genetic analysis of a critically endangered rhododendron provide insights into its conservation |
| Database_name | NCBI |
|---|
Rhododendron_ripense
| References | Reference_title |
|---|---|
| Whole-genome sequencing and analysis of two azaleas, Rhododendron ripense and Rhododendron kiyosumense |
| Database_name | Plantgarden |
|---|
Rhododendron_prattii
| References | Reference_title |
|---|---|
| Pervasive hybridization during evolutionary radiation of Rhododendron subgenus Hymenanthes in mountains of southwest China |
| Database_name | NGDC |
|---|
Vaccinium_corymbosum
| References | Reference_title |
|---|---|
| Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry |
| Database_name | Coge |
|---|
Vaccinium_darrowii
| References | Reference_title |
|---|---|
| High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii) |
| Database_name | GDV |
|---|
Vaccinium_caesariense
| References | Reference_title |
|---|---|
| Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum) |
| Database_name | GDV |
|---|
Vaccinium_macrocarpon
| References | Reference_title |
|---|---|
| Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. |
| Database_name | GDV |
|---|
Vaccinium_microcarpum
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly of the American Cranberry ( Vaccinium macrocarpon Ait.) and Its Wild Relative Vaccinium microcarpum |
| Database_name | GDV |
|---|
Vaccinium_oxycoccos
| References | Reference_title |
|---|---|
| Contrasting a reference cranberry genome to a crop wild relative provides insights into adaptation, domestication, and breeding. |
| Database_name | GDV |
|---|
Vaccinium_myrtillus
| References | Reference_title |
|---|---|
| A chromosome-scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition |
| Database_name | GDV |
|---|
Camptotheca_acuminata
| References | Reference_title |
|---|---|
| De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin |
| Database_name | Dryad |
|---|
Genlisea_aurea
| References | Reference_title |
|---|---|
| Comparative genomic analysis of Genlisea (corkscrew plants—Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes |
| Database_name | NCBI |
|---|
Mimulus_guttatus
| References | Reference_title |
|---|---|
| Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun 2014 Sep 24 |
| Database_name | Phytozome |
|---|
Mimulus_luteus
| References | Reference_title |
|---|---|
| Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower |
| Database_name | CoGe |
|---|
Strobilanthes_cusia
| References | Reference_title |
|---|---|
| Blue genome: chromosome-scale genome reveals the evolutionary and molecular basis of indigo biosynthesis in Strobilanthes cusia |
| Database_name | Strobilanthes Cusia Genome Database |
|---|
Fraxinus_excelsior
| References | Reference_title |
|---|---|
| Genome sequence and genetic diversity of European ash trees |
| Database_name | ASH |
|---|
Olea_europaea
| References | Reference_title |
|---|---|
| Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.) |
| Database_name | Phytozome |
|---|
Boea_hygrometrica
| References | Reference_title |
|---|---|
| The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydration. Xiao L, et al. Proc Natl Acad Sci U S A 2015 May 5 |
| Database_name | NCBI |
|---|
Antirrhinum_majus
| References | Reference_title |
|---|---|
| Genome structure and evolution of Antirrhinum majus L |
| Database_name | snapdragon genome database |
|---|
Callicarpa_americana
| References | Reference_title |
|---|---|
| The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis |
| Database_name | GigaDB |
|---|
Pogostemon_cablin
| References | Reference_title |
|---|---|
| Building an octaploid genome and transcriptome of the medicinal plant Pogostemon cablin from Lamiales |
| Database_name | Figshare |
|---|
Fraxinus_pennsylvanica
| References | Reference_title |
|---|---|
| A high-quality reference genome for Fraxinus pennsylvanica for ash species restoration and research |
| Database_name | Zenodo |
|---|
Jasminum_sambac
| References | Reference_title |
|---|---|
| Genomes of single- and double-petal jasmines (Jasminum sambac) provide insights into their divergence time and structural variations |
| Database_name | NGDC |
|---|
Perilla_frutescens
| References | Reference_title |
|---|---|
| Incipient diploidization of the medicinal plant Perilla within 10,000 years |
| Database_name | NCBI |
|---|
Salvia_hispanica
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of chia provides insights into high omega-3 content and coat color variation of its seeds |
| Database_name | Genhua |
|---|
Salvia_rosmarinus
| References | Reference_title |
|---|---|
| The chromosome-scale assembly of the Salvia rosmarinus genome provides insight into carnosic acid biosynthesis |
| Database_name | Figshare |
|---|
Capsicum_baccatum
| References | Reference_title |
|---|---|
| New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication |
| Database_name | NCBI |
|---|
Capsicum_chinense
| References | Reference_title |
|---|---|
| New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication |
| Database_name | NCBI |
|---|
Petunia_axillaris
| References | Reference_title |
|---|---|
| Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| Database_name | SGN |
|---|
Petunia_inflata
| References | Reference_title |
|---|---|
| Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida |
| Database_name | SGN |
|---|
Solanum_aethiopicum
| References | Reference_title |
|---|---|
| Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome |
| Database_name | GigaDB |
|---|
Solanum_chacoense
| References | Reference_title |
|---|---|
| Genome sequence of M6, a diploid inbred clone of the highâ€glycoalkaloidâ€producing tuberâ€bearing potato species Solanum chacoense, reveals residual heterozygosity |
| Database_name | Dryad |
|---|
Solanum_chilense
| References | Reference_title |
|---|---|
| The de novo Reference Genome and Transcriptome Assemblies of the Wild Tomato Species Solanum chilense Highlights Birth and Death of NLR Genes Between Tomato Species |
| Database_name | NCBI |
|---|
Solanum_pimpinellifolium
| References | Reference_title |
|---|---|
| De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing |
| Database_name | SGN |
|---|
Cuscuta_campestris
| References | Reference_title |
|---|---|
| Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants |
| Database_name | NCBI |
|---|
Physalis_pubescens
| References | Reference_title |
|---|---|
| The Physalis floridana genome provides insights into the biochemical and morphological evolution of Physalis fruits |
| Database_name | CNGB |
|---|
Solanum_muricatum
| References | Reference_title |
|---|---|
| Chromosomeâ€level pepino genome provides insights into genome evolution and anthocyanin biosynthesis in Solanaceae |
| Database_name | NGDC |
|---|
Solanum_lycopersicoides
| References | Reference_title |
|---|---|
| A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity |
| Database_name | SGN |
|---|
Solanum_lycopersicum
| References | Reference_title |
|---|---|
| De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing |
| Database_name | SGN |
|---|
Capsicum_annuum
| References | Reference_title |
|---|---|
| Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library |
| Database_name | SGN |
|---|
Solanum_pennellii
| References | Reference_title |
|---|---|
| De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing |
| Database_name | SGN |
|---|
Coffea_humblotiana
Nicotiana_benthamiana
| References | Reference_title |
|---|---|
| A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research |
| Database_name | SGN |
|---|
Nicotiana_attenuata
| References | Reference_title |
|---|---|
| Wild tobacco genomes reveal the evolution of nicotine biosynthesis |
| Database_name | SGN |
|---|
Nicotiana_tabacum
| References | Reference_title |
|---|---|
| A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency |
| Database_name | SGN |
|---|
Nicotiana_tomentosiformis
| References | Reference_title |
|---|---|
| Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis |
| Database_name | SGN |
|---|
Solanum_habrochaites
| References | Reference_title |
|---|---|
| A draft genome assembly for the heterozygous wild tomato Solanum habrochaites highlights haplotypic structural variations of intracellular immune receptors |
| Database_name | SGN |
|---|
Physalis_grisea
| References | Reference_title |
|---|---|
| Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome |
| Database_name | github |
|---|
Physalis_pruinosa
| References | Reference_title |
|---|---|
| Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome |
| Database_name | github |
|---|
Solanum_tuberosum
| References | Reference_title |
|---|---|
| Genome architecture and tetrasomic inheritance of autotetraploid potato |
| Database_name | SpudDB |
|---|
Solanum_melongena
| References | Reference_title |
|---|---|
| Improved genome assembly and pan-genome provide key insights into eggplant domestication and breeding |
| Database_name | SGN |
|---|
Datura_stramonium
| References | Reference_title |
|---|---|
| Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture |
| Database_name | NCBI |
|---|
Nicotiana_sylvestris
| References | Reference_title |
|---|---|
| Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis |
| Database_name | NCBI |
|---|
Solanum_commersonii
| References | Reference_title |
|---|---|
| The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives |
| Database_name | NCBI |
|---|
Coffea_canephora
| References | Reference_title |
|---|---|
| The coffee genome provides insight into the convergent evolution of caffeine biosynthesis |
| Database_name | NCBI |
|---|
Catharanthus_roseus
| References | Reference_title |
|---|---|
| Genomeâ€guided investigation of plant natural product biosynthesis |
| Database_name | Dryad |
|---|
Neolamarckia_cadamba
| References | Reference_title |
|---|---|
| Chromosome-level assembly of the Neolamarckia cadamba genome provides insights into the evolution of cadambine biosynthesis |
| Database_name | Figshare |
|---|
Carthamus_tinctorius
| References | Reference_title |
|---|---|
| The chromosomeâ€scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis |
| Database_name | The Genome Database of Carthamus tinctorius |
|---|
Chrysanthemum_nankingense
| References | Reference_title |
|---|---|
| The Chrysanthemum nankingense Genome Provides Insights into the Evolution and Diversification of Chrysanthemum Flowers and Medicinal Traits |
| Database_name | Chrysanthemum Genome Database |
|---|
Helianthus_annuus
| References | Reference_title |
|---|---|
| The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution |
| Database_name | NCBI |
|---|
Lactuca_sativa
| References | Reference_title |
|---|---|
| Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce |
| Database_name | Phytozome |
|---|
Platycodon_grandiflorus
| References | Reference_title |
|---|---|
| Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in Platycodon grandiflorus, a medicinal plant |
| Database_name | Self DB |
|---|
Arctium_lappa
| References | Reference_title |
|---|---|
| The first high-quality chromosomal genome assembly of a medicinal and edible plant Arctium lappa |
| Database_name | Figshare |
|---|
Taraxacum_koksaghyz
| References | Reference_title |
|---|---|
| Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum |
| Database_name | NGDC |
|---|
Taraxacum_mongolicum
| References | Reference_title |
|---|---|
| Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum |
| Database_name | NGDC |
|---|
Glebionis_coronaria
| References | Reference_title |
|---|---|
| Chromosome-level genome of a leaf vegetable Glebionis coronaria provides insights into the biosynthesis of monoterpenoids contributing to its special aroma |
| Database_name | figshare |
|---|
Lonicera_japonica
| References | Reference_title |
|---|---|
| The honeysuckle genome provides insight into the molecular mechanism of carotenoid metabolism underlying dynamic flower coloration |
| Database_name | CNGB |
|---|
Apium_graveolens
| References | Reference_title |
|---|---|
| The celery genome sequence reveals sequential paleoâ€polyploidizations, karyotype evolution and resistance gene reduction in apiales |
| Database_name | CGDB |
|---|
Coriandrum_sativum
| References | Reference_title |
|---|---|
| Deciphering the highâ€quality genome sequence of coriander that causes controversial feelings |
| Database_name | CGDB |
|---|
Daucus_carota
| References | Reference_title |
|---|---|
| The genome sequence of ‘Kurodagosun’, a major carrot variety in Japan and China, reveals insights into biological research and carrot breeding |
| Database_name | CGDB |
|---|
Panax_ginseng
| References | Reference_title |
|---|---|
| Genome and evolution of the shade-requiring medicinal herb Panax ginseng |
| Database_name | GinsengDB |
|---|
Aralia_elata
| References | Reference_title |
|---|---|
| Deletion and tandem duplications of biosynthetic genes drive the diversity of triterpenoids in Aralia elata |
| Database_name | Dryad |
|---|
Angelica_sinensis
| References | Reference_title |
|---|---|
| The chromosome-level genome of female ginseng (Angelica sinensis) provides insights into molecular mechanisms and evolution of coumarin biosynthesis |
| Database_name | CNSA |
|---|
Kalanchoe_fedtschenkoi
| References | Reference_title |
|---|---|
| The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism |
| Database_name | Phytozome |
|---|
Rhodiola_crenulata
| References | Reference_title |
|---|---|
| Draft genome sequence of the Tibetan medicinal herb Rhodiola crenulata |
| Database_name | GigaDB |
|---|
Paeonia_suffruticosa
| References | Reference_title |
|---|---|
| Draft genome of the famous ornamental plant Paeonia suffruticosa |
| Database_name | CNGB |
|---|
Paeonia_ostii
| References | Reference_title |
|---|---|
| Genomic basis of the giga-chromosomes and giga-genome of tree peony Paeonia ostii |
| Database_name | CNGB |
|---|
Vitis_amurensis
| References | Reference_title |
|---|---|
| The genome of Shanputao (Vitis amurensis) provides a new insight into cold tolerance of grapevine |
| Database_name | grapeworld |
|---|
Vitis_vinifera
| References | Reference_title |
|---|---|
| The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication |
| Database_name | Phytozome |
|---|
Cissus_rotundifolia
| References | Reference_title |
|---|---|
| A genome for Cissus illustrates features underlying its evolutionary success in dry savannas |
| Database_name | NGDC |
|---|
Vitis_riparia
| References | Reference_title |
|---|---|
| HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101–14 Mgt |
| Database_name | Zenodo |
|---|
Vitis_rupestris
| References | Reference_title |
|---|---|
| HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101–14 Mgt |
| Database_name | Zenodo |
|---|
Vitis_berlandieri
| References | Reference_title |
|---|---|
| HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101–14 Mgt |
| Database_name | Zenodo |
|---|
Vitis_xlabruscana
| References | Reference_title |
|---|---|
| De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’ |
| Database_name | Plant GARDEN |
|---|
Benincasa_hispida
| References | Reference_title |
|---|---|
| The wax gourd genomes offer insights into the genetic diversity and ancestral cucurbit karyotype |
| Database_name | CuGenDB |
|---|
Citrullus_lanatus
| References | Reference_title |
|---|---|
| The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions |
| Database_name | CuGenDB |
|---|
Cucumis_hystrix
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of Cucumis hystrix—a wild species interspecifically cross-compatible with cultivated cucumber |
| Database_name | Figshare |
|---|
Cucurbita_maxima
| References | Reference_title |
|---|---|
| Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes |
| Database_name | CuGenDB |
|---|
Cucurbita_moschata
| References | Reference_title |
|---|---|
| Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes |
| Database_name | CuGenDB |
|---|
Cucurbita_pepo
| References | Reference_title |
|---|---|
| De novo assembly of the zucchini genome reveals a wholeâ€genome duplication associated with the origin of the Cucurbita genus |
| Database_name | CuGenDB |
|---|
Lagenaria_siceraria
| References | Reference_title |
|---|---|
| The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ringâ€spot virus resistance locus |
| Database_name | CuGenDB |
|---|
Luffa_cylindrica
| References | Reference_title |
|---|---|
| De novo assemblies of Luffa acutangula and Luffa cylindrica genomes reveal an expansion associated with substantial accumulation of transposable elements |
| Database_name | CNGB |
|---|
Sechium_edule
| References | Reference_title |
|---|---|
| Combined genomic, transcriptomic, and metabolomic analyses provide insights into chayote (Sechium edule) evolution and fruit development |
| Database_name | CuGenDB |
|---|
Trichosanthes_anguina
| References | Reference_title |
|---|---|
| The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening |
| Database_name | CuGenDB |
|---|
Datisca_glomerata
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis |
| Database_name | GigaDB |
|---|
Begonia_fuchsioides
| References | Reference_title |
|---|---|
| Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis |
| Database_name | GigaDB |
|---|
Siraitia_grosvenorii
| References | Reference_title |
|---|---|
| Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo |
| Database_name | GigaDB |
|---|
Begonia_darthvaderiana
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Begonia_loranthoides
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Begonia_masoniana
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Begonia_peltatifolia
| References | Reference_title |
|---|---|
| Genomes shed light on the evolution of Begonia, a mega-diverse genus |
| Database_name | CNGB |
|---|
Cucurbita_argyrosperma
| References | Reference_title |
|---|---|
| The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative |
| Database_name | figshare |
|---|
Cucumis_melo
| References | Reference_title |
|---|---|
| A High-Quality Melon Genome Assembly Provides Insights into Genetic Basis of Fruit Trait Improvement |
| Database_name | CuGenDB |
|---|
Cucumis_sativus
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of cucumber (Cucumis sativus L.) |
| Database_name | CuGenDB |
|---|
Momordica_charantia
| References | Reference_title |
|---|---|
| Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of nonclassic domestication |
| Database_name | CuGenDB |
|---|
Cicer_arietinum
| References | Reference_title |
|---|---|
| An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.) |
| Database_name | Phytozome |
|---|
Faidherbia_albida
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Glycine_max
Glycine_soja
Lablab_purpureus
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Lupinus_angustifolius
| References | Reference_title |
|---|---|
| Wholeâ€genome assembly and resequencing reveal genomic imprint and key genes of rapid domestication in narrowâ€leafed lupin |
| Database_name | NCBI |
|---|
Lupinus_albus
| References | Reference_title |
|---|---|
| The genome evolution and low-phosphorus adaptation in white lupin |
| Database_name | NCBI |
|---|
Medicago_polymorpha
| References | Reference_title |
|---|---|
| The genome of Medicago polymorpha provides insights into its edibility and nutritional value as a vegetable and forage legume |
| Database_name | NGDC |
|---|
Medicago_truncatula
| References | Reference_title |
|---|---|
| An improved genome release (version Mt4.0) for the model legume Medicago truncatula |
| Database_name | Phytozome |
|---|
Phaseolus_vulgaris
| References | Reference_title |
|---|---|
| Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes |
| Database_name | NCBI |
|---|
Senna_tora
| References | Reference_title |
|---|---|
| Genome-enabled discovery of anthraquinone biosynthesis in Senna tora |
| Database_name | NCBI |
|---|
Spatholobus_suberectus
Vigna_subterranea
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Vigna_unguiculata
| References | Reference_title |
|---|---|
| The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis |
| Database_name | Phytozome |
|---|
Dalbergia_odorifera
| References | Reference_title |
|---|---|
| The chromosome-level draft genome of Dalbergia odorifera |
| Database_name | GigaDB |
|---|
Pisum_sativum
| References | Reference_title |
|---|---|
| A reference genome for pea provides insight into legume genome evolution |
| Database_name | plant and fungi data integration |
|---|
Vigna_umbellata
| Database_name | NCBI |
|---|
Arachis_hypogaea
| References | Reference_title |
|---|---|
| The genome sequence of segmental allotetraploid peanut Arachis hypogaea |
| Database_name | peanutbase |
|---|
Eriobotrya_japonica
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and annotation of the loquat (Eriobotrya japonica) genome |
| Database_name | GigaDB |
|---|
Prunus_armeniaca
| References | Reference_title |
|---|---|
| Population genomics of apricots unravels domestication history and adaptive events |
| Database_name | GDR |
|---|
Prunus_mandshurica
| References | Reference_title |
|---|---|
| Population genomics of apricots unravels domestication history and adaptive events |
| Database_name | GDR |
|---|
Prunus_sibirica
| References | Reference_title |
|---|---|
| Population genomics of apricots unravels domestication history and adaptive events |
| Database_name | GDR |
|---|
Rubus_chingii
| References | Reference_title |
|---|---|
| The chromosome-scale reference genome of Rubus chingii Hu provides insight into the biosynthetic pathway of hydrolyzable tannins |
| Database_name | GDR |
|---|
Artocarpus_altilis
| References | Reference_title |
|---|---|
| Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis) |
| Database_name | Bioinformatics & Systems Biology |
|---|
Humulus_lupulus
| References | Reference_title |
|---|---|
| A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome |
| Database_name | HopBase |
|---|
Rubus_occidentalis
| References | Reference_title |
|---|---|
| A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome |
| Database_name | GigaDB |
|---|
Cerasus_kanzakura
| References | Reference_title |
|---|---|
| Genome sequencing and analysis of two early-flowering cherry (Cerasus × kanzakura) varieties, ‘Kawazu-zakura’ and ‘Atami-zakura’ |
| Database_name | GDR |
|---|
Fragaria_daltoniana
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_iinumae
| References | Reference_title |
|---|---|
| Reply to: Revisiting the origin of octoploid strawberry |
| Database_name | GDR |
|---|
Fragaria_mandshurica
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_nilgerrensis
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_nubicola
| References | Reference_title |
|---|---|
| Tracing the Diploid Ancestry of the Cultivated Octoploid Strawberry |
| Database_name | GDR |
|---|
Fragaria_pentaphylla
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Fragaria_viridis
| References | Reference_title |
|---|---|
| Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.) |
| Database_name | GDR |
|---|
Gillenia_trifoliata
| References | Reference_title |
|---|---|
| The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae |
| Database_name | GDR |
|---|
Hippophae_rhamnoides
| References | Reference_title |
|---|---|
| Genome of Hippophae rhamnoides provides insights into a conserved molecular mechanism in actinorhizal and rhizobial symbioses |
| Database_name | CNGB |
|---|
Malus_baccata
| References | Reference_title |
|---|---|
| Sequencing of a Wild Apple (Malus baccata) Genome Unravels the Differences Between Cultivated and Wild Apple Species Regarding Disease Resistance and Cold Tolerance |
| Database_name | GDR |
|---|
Potentilla_anserina
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly Provides New Insights into Genome Evolution and Tuberous Root Formation of Potentilla anserina |
| Database_name | Figshare |
|---|
Prunus_avium
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencin |
| Database_name | GDR |
|---|
Prunus_domestica
| References | Reference_title |
|---|---|
| Defining the ‘HoneySweet’ insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica) |
| Database_name | GDR |
|---|
Prunus_dulcis
| References | Reference_title |
|---|---|
| Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence |
| Database_name | GDR |
|---|
Prunus_mume
| References | Reference_title |
|---|---|
| The chromosome-level genome provides insight into the molecular mechanism underlying the tortuous-branch phenotype of Prunus mume |
| Database_name | GDR |
|---|
Prunus_salicina
| References | Reference_title |
|---|---|
| Chromosome-level draft genome of a diploid plum (Prunus salicina) |
| Database_name | GDR |
|---|
Prunus_yedoensis
| References | Reference_title |
|---|---|
| Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries |
| Database_name | GDR |
|---|
Pyrus_betulifolia
| References | Reference_title |
|---|---|
| De novo assembly of a wild pear (Pyrus betuleafolia) genome |
| Database_name | GDR |
|---|
Pyrus_pyrifolia
| Database_name | GDR |
|---|
Rosa_chinensis
| References | Reference_title |
|---|---|
| The Rosa genome provides new insights into the domestication of modern roses |
| Database_name | GDR |
|---|
Rosa_wichuraiana
| References | Reference_title |
|---|---|
| Rose without prickle: genomic insights linked to moisture adaptation |
| Database_name | GDR |
|---|
Sorbus_pohuashanensis
| References | Reference_title |
|---|---|
| Genome sequence and transcriptome of Sorbus pohuashanensis provide insights into population evolution and leaf sunburn response |
| Database_name | Figshare |
|---|
Malus_sylvestris
| References | Reference_title |
|---|---|
| Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
| Database_name | GDR |
|---|
Malus_sieversii
| References | Reference_title |
|---|---|
| Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
| Database_name | GDR |
|---|
Malus_domestica
| References | Reference_title |
|---|---|
| Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication |
| Database_name | GDR |
|---|
Fragaria_ananassa
| References | Reference_title |
|---|---|
| Origin and evolution of the octoploid strawberry genome |
| Database_name | GDR |
|---|
Fragaria_vesca
| References | Reference_title |
|---|---|
| Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity |
| Database_name | GDR |
|---|
Potentilla_micrantha
| References | Reference_title |
|---|---|
| The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry) |
| Database_name | GDR |
|---|
Prunus_persica
| Database_name | GDR |
|---|
Pyrus_communis
| References | Reference_title |
|---|---|
| Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.) |
| Database_name | GDR |
|---|
Rosa_rugosa
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics |
| Database_name | GDR |
|---|
Rosa_multiflora
| References | Reference_title |
|---|---|
| Genome structure of Rosa multiflora, a wild ancestor of cultivated roses |
| Database_name | GDR |
|---|
Rubus_corchorifolius
| References | Reference_title |
|---|---|
| Genome Assembly and Population Resequencing Reveal the Geographical Divergence of Shanmei (Rubus corchorifolius) |
| Database_name | NGDC |
|---|
Pyrus_bretschneideri
| References | Reference_title |
|---|---|
| Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri 'DangshanSuli' v1.0 genome |
| Database_name | GDR |
|---|
Rubus_argutus
| References | Reference_title |
|---|---|
| A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. “Hillquistâ€) |
| Database_name | GDR |
|---|
Prunus_kansuensis
| References | Reference_title |
|---|---|
| Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance |
| Database_name | GDR |
|---|
Prunus_mira
| References | Reference_title |
|---|---|
| Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance |
| Database_name | GDR |
|---|
Kandelia_obovata
| References | Reference_title |
|---|---|
| Chromosome-scale assembly of the Kandelia obovata genome |
| Database_name | NGDC |
|---|
Populus_glandulosa
| References | Reference_title |
|---|---|
| The genome of Populus alba x Populus tremula var. glandulosa clone 84K |
| Database_name | CNSA |
|---|
Populus_pruinosa
| References | Reference_title |
|---|---|
| The draft genome sequence of a desert tree Populus pruinosa |
| Database_name | GigaDB |
|---|
Populus_trichocarpa
| References | Reference_title |
|---|---|
| The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) |
| Database_name | Phytozome |
|---|
Salix_brachista
| References | Reference_title |
|---|---|
| Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot |
| Database_name | NCBI |
|---|
Salix_suchowensis
| References | Reference_title |
|---|---|
| The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution |
| Database_name | NCBI |
|---|
Manihot_esculenta
| References | Reference_title |
|---|---|
| Genome-wide characterization and analysis of bZIP transcription factor gene family related to abiotic stress in cassava |
| Database_name | Phytozome |
|---|
Ricinus_communis
| References | Reference_title |
|---|---|
| Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets |
| Database_name | Phytozome |
|---|
Bruguiera_sexangula
| References | Reference_title |
|---|---|
| De Novo Reference Assembly of the Upriver Orange Mangrove (Bruguiera sexangula) Genome |
| Database_name | Figshare |
|---|
Euphorbia_lathyris
| References | Reference_title |
|---|---|
| High-quality genome assembly of an important biodiesel plant, Euphorbia lathyris L |
| Database_name | Figshare |
|---|
Speranskia_yunnanensis
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly of the Rare and Endangered Tropical Plant Speranskia yunnanensis (Euphorbiaceae) |
| Database_name | Figshare |
|---|
Salix_chaenomeloides
| References | Reference_title |
|---|---|
| Repeated turnovers keep sex chromosomes young in willows |
| Database_name | NGDC |
|---|
Salix_arbutifolia
| References | Reference_title |
|---|---|
| Repeated turnovers keep sex chromosomes young in willows |
| Database_name | NGDC |
|---|
Populus_wilsonii
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly provides insights into the molecular mechanisms of tissue development of Populus wilsonii |
| Database_name | figshare |
|---|
Carya_illinoinensis
| References | Reference_title |
|---|---|
| The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition |
| Database_name | NCBI |
|---|
Corylus_avellana
| References | Reference_title |
|---|---|
| A chromosomeâ€scale genome assembly of European hazel (Corylus avellana L.) reveals targets for crop improvement |
| Database_name | HWG |
|---|
Carpinus_fangiana
| References | Reference_title |
|---|---|
| A chromosome-level reference genome of the hornbeam, Carpinus fangiana |
| Database_name | NCBI |
|---|
Morella_rubra
| References | Reference_title |
|---|---|
| Genome sequencing provides insights into the evolution and antioxidant activity of Chinese bayberry |
| Database_name | NCBI |
|---|
Quercus_robur
| References | Reference_title |
|---|---|
| Oak genome reveals facets of long lifespan |
| Database_name | OAK GENOME SEQUENCING |
|---|
Castanopsis_tibetana
| References | Reference_title |
|---|---|
| Chromosome-scale genome assembly of Castanopsis tibetana provides a powerful comparative framework to study the evolution and adaptation of Fagaceae trees |
| Database_name | CNGB |
|---|
Cyclocarya_paliurus
| References | Reference_title |
|---|---|
| Insights into the evolution and hypoglycemic metabolite biosynthesis of autotetraploid Cyclocarya paliurus by combining genomic, transcriptomic and metabolomic analyses |
| Database_name | NGDC |
|---|
Quercus_mongolica
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of the Mongolian oak (Quercus mongolica) |
| Database_name | Figshare |
|---|
Carpinus_viminea
| References | Reference_title |
|---|---|
| Genomic evidence for homoploid hybrid speciation between ancestors of two different genera |
| Database_name | Figshare |
|---|
Ostrya_rehderiana
| References | Reference_title |
|---|---|
| Genomic evidence for homoploid hybrid speciation between ancestors of two different genera |
| Database_name | Figshare |
|---|
Quercus_acutissima
| References | Reference_title |
|---|---|
| Genome-wide analyses of introgression between two sympatric Asian oak species |
| Database_name | NGDC |
|---|
Quercus_gilva
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of Quercus gilva: Insights into the evolution of Quercus section Cyclobalanopsis (Fagaceae) |
| Database_name | figshare |
|---|
Quercus_variabilis
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly of the Chinese cork oak (Quercus variabilis) |
| Database_name | CNGB |
|---|
Juglans_sigillata
| References | Reference_title |
|---|---|
| Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis |
| Database_name | GigaDB |
|---|
Averrhoa_carambola
| References | Reference_title |
|---|---|
| Dissecting the genome of star fruit (Averrhoa carambola L.) |
| Database_name | NGDC |
|---|
Aethionema_arabicum
| References | Reference_title |
|---|---|
| An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions |
| Database_name | BRAD |
|---|
Boechera_retrofracta
| References | Reference_title |
|---|---|
| Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes |
| Database_name | NCBI |
|---|
Boechera_stricta
| References | Reference_title |
|---|---|
| Young inversion with multiple linked QTLs under selection in a hybrid zone |
| Database_name | Phytozome |
|---|
Isatis_indigotica
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly of Isatis indigotica, an important medicinal plant used in traditional Chinese medicine: An Isatis genome |
| Database_name | BRAD |
|---|
Leavenworthia_alabamica
| References | Reference_title |
|---|---|
| An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions |
| Database_name | BRAD |
|---|
Lepidium_meyenii
| References | Reference_title |
|---|---|
| Genome of Plant Maca (Lepidium meyenii) Illuminates Genomic Basis for High-Altitude Adaptation in the Central Andes |
| Database_name | NCBI |
|---|
Microthlaspi_erraticum
| References | Reference_title |
|---|---|
| The Genome of Microthlaspi erraticum (Brassicaceae) Provides Insights Into the Adaptation to Highly Calcareous Soils |
| Database_name | NCBI |
|---|
Schrenkiella_parvula
| References | Reference_title |
|---|---|
| The genome of the extremophile crucifer Thellungiella parvula |
| Database_name | BRAD |
|---|
Sisymbrium_irio
| References | Reference_title |
|---|---|
| An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions |
| Database_name | BRAD |
|---|
Arabidopsis_halleri
| References | Reference_title |
|---|---|
| Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species |
| Database_name | BRAD |
|---|
Arabidopsis_lyrata
| References | Reference_title |
|---|---|
| Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis |
| Database_name | Phytozome |
|---|
Arabis_alpina
| References | Reference_title |
|---|---|
| Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species |
| Database_name | BRAD |
|---|
Barbarea_vulgaris
| References | Reference_title |
|---|---|
| The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry |
| Database_name | Barbarea vulgaris Genome Database |
|---|
Brassica_carinata
| References | Reference_title |
|---|---|
| Brassica carinata genome characterization clarifies U’s triangle model of evolution and polyploidy in Brassica |
| Database_name | TBGR |
|---|
Brassica_juncea
| References | Reference_title |
|---|---|
| The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection |
| Database_name | BRAD (Brassica Database) |
|---|
Brassica_napus
| References | Reference_title |
|---|---|
| Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus |
| Database_name | BnIR |
|---|
Brassica_nigra
| References | Reference_title |
|---|---|
| A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome |
| Database_name | BnIR |
|---|
Brassica_oleracea
| References | Reference_title |
|---|---|
| The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes |
| Database_name | BnIR |
|---|
Capsella_grandiflora
| References | Reference_title |
|---|---|
| The Capsella rubella genome and the genomic consequences of rapid mating system evolution |
| Database_name | Phytozome |
|---|
Capsella_rubella
| References | Reference_title |
|---|---|
| The Capsella rubella genome and the genomic consequences of rapid mating system evolution |
| Database_name | Phytozome |
|---|
Cardamine_hirsuta
| References | Reference_title |
|---|---|
| The Cardamine hirsuta genome offers insight into the evolution of morphological diversity |
| Database_name | Cardamine hirsuta |
|---|
Carica_papaya
| References | Reference_title |
|---|---|
| SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya |
| Database_name | NGDC |
|---|
Eutrema_salsugineum
| References | Reference_title |
|---|---|
| The reference genome of the halophytic plant Eutrema salsugineum |
| Database_name | Phytozome |
|---|
Raphanus_sativus
| References | Reference_title |
|---|---|
| Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild, and weedy radishes |
| Database_name | NGDC |
|---|
Thlaspi_arvense
| References | Reference_title |
|---|---|
| A draft genome of field pennycress (Thlaspi arvense) provides tools for the domestication of a new winter biofuel crop |
| Database_name | BRAD (Brassica Database) |
|---|
Zostera_muelleri
| References | Reference_title |
|---|---|
| The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri) |
| Database_name | applied bioinformatics group |
|---|
Moringa_oleifera
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | Bioinformatics & Systems Biology |
|---|
Bretschneidera_sinensis
| References | Reference_title |
|---|---|
| The genome of the Paleogene relic tree Bretschneidera sinensis: insights into trade-offs in gene family evolution, demographic history, and adaptive SNPs |
| Database_name | Figshare |
|---|
Cardamine_enshiensis
| References | Reference_title |
|---|---|
| The Cardamine enshiensis genome reveals whole genome duplication and insight into selenium hyperaccumulation and tolerance |
| Database_name | NGDC |
|---|
Arabidopsis_thaliana
| References | Reference_title |
|---|---|
| A near-complete assembly of an Arabidopsis thaliana genome |
| Database_name | AraShare |
|---|
Orychophragmus_violaceus
| References | Reference_title |
|---|---|
| The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits |
| Database_name | NGDC |
|---|
Hirschfeldia_incana
| References | Reference_title |
|---|---|
| The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency |
| Database_name | Hirschfeldia incana Web Portal |
|---|
Rhamphospermum_arvense
| References | Reference_title |
|---|---|
| Sinapis genomes provide insights into whole-genome triplication and divergence patterns within tribe Brassiceae |
| Database_name | Figshare |
|---|
Sinapis_alba
| References | Reference_title |
|---|---|
| Sinapis genomes provide insights into whole-genome triplication and divergence patterns within tribe Brassiceae |
| Database_name | Figshare |
|---|
Raphano_brassica
| References | Reference_title |
|---|---|
| Characterization and acceleration of genome shuffling and ploidy reduction in synthetic allopolyploids by genome sequencing and editing |
| Database_name | NGDC |
|---|
Arabis_nemorensis
| References | Reference_title |
|---|---|
| Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species |
| Database_name | NCBI |
|---|
Camelina_sativa
| References | Reference_title |
|---|---|
| The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure |
| Database_name | Ensembl |
|---|
Brassica_rapa
| References | Reference_title |
|---|---|
| A near-complete genome assembly of Brassica rapa provides new insights into the evolution of centromeres |
| Database_name | BRAD |
|---|
Melaleuca_alternifolia
| References | Reference_title |
|---|---|
| A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species |
| Database_name | GigaDB |
|---|
Eucalyptus_grandis
Syzygium_grande
| References | Reference_title |
|---|---|
| Genomic insights into rapid speciation within the world’s largest tree genus Syzygium |
| Database_name | CoGe |
|---|
Aquilaria_sinensis
| References | Reference_title |
|---|---|
| Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family |
| Database_name | GigaDB |
|---|
Corchorus_olitorius
| References | Reference_title |
|---|---|
| The draft genome of Corchorus olitorius cv. JRO-524 (Navin) |
| Database_name | NCBI |
|---|
Gossypium_barbadense
| References | Reference_title |
|---|---|
| Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement |
| Database_name | Phytozome |
|---|
Gossypium_raimondii
| References | Reference_title |
|---|---|
| De novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri |
| Database_name | Phytozome |
|---|
Corchorus_capsularis
| References | Reference_title |
|---|---|
| Comparative genomics of two jute species and insight into fibre biogenesis |
| Database_name | NCBI |
|---|
Gossypium_hirsutum
| References | Reference_title |
|---|---|
| Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement |
| Database_name | Phytozome |
|---|
Gossypium_darwinii
| References | Reference_title |
|---|---|
| Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement |
| Database_name | NCBI |
|---|
Theobroma_cacao
Gossypium_rotundifolium
| References | Reference_title |
|---|---|
| Comparative Genome Analyses Highlight Transposon-Mediated Genome Expansion and the Evolutionary Architecture of 3D Genomic Folding in Cotton |
| Database_name | Figshare |
|---|
Sclerocarya_birrea
| References | Reference_title |
|---|---|
| The draft genomes of five agriculturally important African orphan crops |
| Database_name | GigaDB |
|---|
Citrus_grandis
| References | Reference_title |
|---|---|
| Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction |
| Database_name | Citrus sinensis Annotation project |
|---|
Citrus_sinensis
| References | Reference_title |
|---|---|
| The draft genome of sweet orange (Citrus sinensis) |
| Database_name | Phytozome |
|---|
Xanthoceras_sorbifolium
| References | Reference_title |
|---|---|
| The genome assembly and annotation of yellowhorn (Xanthoceras sorbifoliumBunge) |
| Database_name | GigaDB |
|---|
Acer_catalpifolium
| References | Reference_title |
|---|---|
| Whole-Genome Sequencing of Acer catalpifolium Reveals Evolutionary History of Endangered Species |
| Database_name | NGDC |
|---|
Acer_pseudosieboldianum
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change |
| Database_name | NGDC |
|---|
Litchi_chinensis
| References | Reference_title |
|---|---|
| Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars |
| Database_name | Mendeley |
|---|
Nephelium_lappaceum
| References | Reference_title |
|---|---|
| The chromosome-level rambutan genome reveals a significant role of segmental duplication in the expansion of resistance genes |
| Database_name | Nia |
|---|
Sapindus_mukorossi
| References | Reference_title |
|---|---|
| Chromosome-scale assembly and population diversity analyses provide insights into the evolution of Sapindus mukorossi |
| Database_name | NGDC |
|---|
Zanthoxylum_armatum
| References | Reference_title |
|---|---|
| Chromosome-level assembly of triploid genome of Sichuan pepper (Zanthoxylum armatum) |
| Database_name | Figshare |
|---|
Chloranthus_sessilifolius
| References | Reference_title |
|---|---|
| The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms |
| Database_name | GitHub |
|---|
Ilex_polyneura
| References | Reference_title |
|---|---|
| A chromosome-scale genome assembly for the holly (Ilex polyneura) provides insights into genomic adaptations to elevation in Southwest China |
| Database_name | CNGB |
|---|
Aquilegia_coerulea
| References | Reference_title |
|---|---|
| The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history |
| Database_name | Phytozome |
|---|
Coptis_chinensis
| References | Reference_title |
|---|---|
| Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids |
| Database_name | NCBI |
|---|
Kingdonia_uniflora
| References | Reference_title |
|---|---|
| Genome Sequencing of the Endangered Kingdonia uniflora (Circaeasteraceae, Ranunculales) Reveals Potential Mechanisms of Evolutionary Specialization |
| Database_name | NCBI |
|---|
Corydalis_tomentella
| References | Reference_title |
|---|---|
| The genome of Corydalis reveals the evolution of benzylisoquinoline alkaloid biosynthesis in Ranunculales |
| Database_name | NGDC |
|---|
Papaver_setigerum
| References | Reference_title |
|---|---|
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway |
| Database_name | Github |
|---|
Papaver_rhoeas
| References | Reference_title |
|---|---|
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway |
| Database_name | Github |
|---|
Papaver_somniferum
| References | Reference_title |
|---|---|
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway |
| Database_name | Github |
|---|
Akebia_trifoliata
| References | Reference_title |
|---|---|
| The chromosome-level genome of Akebia trifoliata as an important resource to study plant evolution and environmental adaptation in the Cretaceous |
| Database_name | NGDC |
|---|
Stephania_japonica
Epimedium_pubescens
| References | Reference_title |
|---|---|
| The discovery of a key prenyltransferase gene assisted by a chromosome-level Epimedium pubescens genome |
| Database_name | NGDC |
|---|
Nelumbo_nucifera
| References | Reference_title |
|---|---|
| Genomic variation reveals demographic history and biological adaptation of the ancient relictual, lotus (Nelumbo Adans) |
| Database_name | CoGe |
|---|
Telopea_speciosissima
| References | Reference_title |
|---|---|
| Chromosome-level de novo genome assembly of Telopea speciosissima (New South Wales waratah) using long-reads, linked-reads and Hi-C |
| Database_name | NCBI |
|---|
Macadamia_integrifolia
| References | Reference_title |
|---|---|
| Signatures of selection in recently domesticated macadamia |
| Database_name | NGDC |
|---|
Tetracentron_sinense
| References | Reference_title |
|---|---|
| A chromosome-level genome assembly for the tertiary relict plant Tetracentron sinense oliv. (trochodendraceae) |
| Database_name | NCBI |
|---|
Buxus_sinica
| References | Reference_title |
|---|---|
| Buxus and Tetracentron genomes help resolve eudicot genome history |
| Database_name | Dryad |
|---|
Buxus_austroyunnanensis
| References | Reference_title |
|---|---|
| A high-quality Buxus austro-yunnanensis (Buxales) genome provides new insights into karyotype evolution in early eudicots |
| Database_name | NGDC |
|---|
Amaranthus_tricolor
| References | Reference_title |
|---|---|
| Chromosome-scale Amaranthus tricolor genome provides insights into the evolution of the genus Amaranthus and the mechanism of betalain biosynthesis |
| Database_name | NGDC |
|---|
Cyanidioschyzon_merolae
| References | Reference_title |
|---|---|
| The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions |
| Database_name | NCBI |
|---|
Cyanidiococcus_yangmingshanensis
| Number | Species | Version |
|---|---|---|
| 2 | Cyanidiococcus_yangmingshanensis | v1.0 |
| Order | Family |
|---|---|
| Cyanidiales | Cyanidiaceae |
| References | Reference_title |
|---|---|
| Comparative Genome Analysis Reveals Cyanidiococcus gen. nov., A New Extremophilic Red Algal Genus Sister to Cyanidioschyzon (Cyanidioschyzonaceae, Rhodophyta) |
| Database_name | NCBI |
|---|
Galdieria_sulphuraria
| References | Reference_title |
|---|---|
| Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote |
| Database_name | NCBI |
|---|
Galdieria_phlegrea
| References | Reference_title |
|---|---|
| Adaptation through horizontal gene transfer in the cryptoendolithic red alga Galdieria phlegrea |
| Database_name | Self DB |
|---|
Galdieria_partita
| References | Reference_title |
|---|---|
| Life cycle and functional genomics of the unicellular red alga Galdieria for elucidating algal and plant evolution and industrial use |
| Database_name | NCBI |
|---|
Chondrus_crispus
| References | Reference_title |
|---|---|
| Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida |
| Database_name | Ensembl Plants |
|---|
Gracilariopsis_chorda
| References | Reference_title |
|---|---|
| Analysis of the Draft Genome of the Red Seaweed Gracilariopsis chorda Provides Insights into Genome Size Evolution in Rhodophyta |
| Database_name | NCBI |
|---|
Porphyra_umbilicalis
| References | Reference_title |
|---|---|
| Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta) |
| Database_name | Phytozome |
|---|
Cyanophora_paradoxa
| References | Reference_title |
|---|---|
| Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants |
| Database_name | Self DB |
|---|
Prasinoderma_coloniale
| Number | Species | Version |
|---|---|---|
| 1 | Prasinoderma_coloniale | v1.0 |
| Order | Family |
|---|---|
| Prasinodermatales | Prasinodermataceae |
| References | Reference_title |
|---|---|
| The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants |
| Database_name | CNGB |
|---|
Ostreococcus_lucimarinus
| References | Reference_title |
|---|---|
| The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation |
| Database_name | Phytozome |
|---|
Bathycoccus_prasinos
| References | Reference_title |
|---|---|
| Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage |
| Database_name | NCBI |
|---|
Micromonas_pusilla
| References | Reference_title |
|---|---|
| Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas |
| Database_name | Phytozome |
|---|
Chloropicon_primus
| References | Reference_title |
|---|---|
| A streamlined and predominantly diploid genome in the tiny marine green alga Chloropicon primus |
| Database_name | NCBI |
|---|
Asterochloris_glomerata
| References | Reference_title |
|---|---|
| The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its alga lpartner Asterochloris glomerata |
| Database_name | Phytozome |
|---|
Coccomyxa_subellipsoidea
| Number | Species | Version |
|---|---|---|
| 1 | Coccomyxa_subellipsoidea | v2.0 |
| Order | Family |
|---|---|
| T.ordo incertae sedis | Coccomyxaceae |
| References | Reference_title |
|---|---|
| The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation |
| Database_name | Phytozome |
|---|
Chlorella_variabilis
| References | Reference_title |
|---|---|
| The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex |
| Database_name | NCBI |
|---|
Micractinium_conductrix
| References | Reference_title |
|---|---|
| Genome sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: implications to maltose excretion by a green alga |
| Database_name | NCBI |
|---|
Auxenochlorella_protothecoides
| Number | Species | Version |
|---|---|---|
| 3 | Auxenochlorella_protothecoides | v1.0 |
| Order | Family |
|---|---|
| Chlorellales | Chlorellaceae |
| References | Reference_title |
|---|---|
| Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes |
| Database_name | NCBI |
|---|
Ulva_mutabilis
| References | Reference_title |
|---|---|
| Insights into the Evolution of Multicellularity from the Sea Lettuce Genome |
| Database_name | Self DB |
|---|
Chlamydomonas_incerta
| Number | Species | Version |
|---|---|---|
| 1 | Chlamydomonas_incerta | v1.0 |
| Order | Family |
|---|---|
| Chlamydomonadales | Chlamydomonadaceae |
| References | Reference_title |
|---|---|
| Comparative genomics of Chlamydomonas |
| Database_name | Phytozome |
|---|
Chlamydomonas_schloesseri
| Number | Species | Version |
|---|---|---|
| 2 | Chlamydomonas_schloesseri | v1.0 |
| Order | Family |
|---|---|
| Chlamydomonadales | Chlamydomonadaceae |
| References | Reference_title |
|---|---|
| Comparative genomics of Chlamydomonas |
| Database_name | NCBI |
|---|
Chlamydomonas_reinhardtii
| Number | Species | Version |
|---|---|---|
| 3 | Chlamydomonas_reinhardtii | v5.6 |
| Order | Family |
|---|---|
| Chlamydomonadales | Chlamydomonadaceae |
| References | Reference_title |
|---|---|
| The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions |
| Database_name | Phytozome |
|---|
Chlamydomonas_eustigma
| Number | Species | Version |
|---|---|---|
| 4 | Chlamydomonas_eustigma | v1.0 |
| Order | Family |
|---|---|
| Chlamydomonadales | Chlamydomonadaceae |
| References | Reference_title |
|---|---|
| Acidophilic green algal genome provides insights into adaptation to an acidic environment |
| Database_name | Phytozome |
|---|
Edaphochlamys_debaryana
| Number | Species | Version |
|---|---|---|
| 5 | Edaphochlamys_debaryana | v1.0 |
| Order | Family |
|---|---|
| Chlamydomonadales | Chlamydomonadaceae |
| References | Reference_title |
|---|---|
| Does mitochondrial DNA replication in Chlamydomonas require a reverse transcriptase? |
| Database_name | NCBI |
|---|
Astrephomene_gubernaculifera
| References | Reference_title |
|---|---|
| Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation |
| Database_name | NCBI |
|---|
Dunaliella_salina
| References | Reference_title |
|---|---|
| Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18 |
| Database_name | NCBI |
|---|
Tetrabaena_socialis
| Database_name | NCBI |
|---|
Volvox_carteri
| References | Reference_title |
|---|---|
| Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri |
| Database_name | Phytozome |
|---|
Gonium_pectorale
| References | Reference_title |
|---|---|
| The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity |
| Database_name | NCBI |
|---|
Chromochloris_zofingiensis
| Number | Species | Version |
|---|---|---|
| 1 | Chromochloris_zofingiensis | v5.2 |
| Order | Family |
|---|---|
| Sphaeropleales | Chromochloridaceae |
| References | Reference_title |
|---|---|
| Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production |
| Database_name | Phytozome |
|---|
Monoraphidium_neglectum
| References | Reference_title |
|---|---|
| Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production |
| Database_name | Phytozome |
|---|
Chlorokybus_atmophyticus
| References | Reference_title |
|---|---|
| Genomes of early-diverging streptophyte algae shed light on plant terrestrialization |
| Database_name | CNGB |
|---|
Mesostigma_viride
| References | Reference_title |
|---|---|
| Genomes of early-diverging streptophyte algae shed light on plant terrestrialization |
| Database_name | CNGB |
|---|
Klebsormidium_nitens
| References | Reference_title |
|---|---|
| Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation |
| Database_name | Self DB |
|---|
Chara_braunii
| References | Reference_title |
|---|---|
| The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization |
| Database_name | Ensembl Plants |
|---|
Mesotaenium_endlicherianum
| References | Reference_title |
|---|---|
| Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution |
| Database_name | figshare |
|---|
Penium_margaritaceum
| References | Reference_title |
|---|---|
| The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants |
| Database_name | Penium Genome Database |
|---|
Spirogloea_muscicola
| References | Reference_title |
|---|---|
| Genomes o f S ubaerial Z ygnematophyceae Provide Insights into Land Plant E volution |
| Database_name | figshare |
|---|
Marchantia_polymorpha
| References | Reference_title |
|---|---|
| Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome |
| Database_name | Phytozome |
|---|
Physcomitrella_patens
| References | Reference_title |
|---|---|
| The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants |
| Database_name | Phytozome |
|---|
Fontinalis_antipyretica
| References | Reference_title |
|---|---|
| Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
| Database_name | GigaDB |
|---|
Entodon_seductrix
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny |
| Database_name | figshare |
|---|
Hypnum_curvifolium
| References | Reference_title |
|---|---|
| Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny |
| Database_name | figshare |
|---|
Anthoceros_angustus
Anthoceros_agrestis
| References | Reference_title |
|---|---|
| Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts |
| Database_name | UZH |
|---|
Anthoceros_punctatus
| References | Reference_title |
|---|---|
| Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts |
| Database_name | UZH |
|---|
Selaginella_moellendorffii
| Number | Species | Version |
|---|---|---|
| 1 | Selaginella_moellendorffii | v1.0 |
| Order | Family |
|---|---|
| Selaginellales | Selaginellaceae |
| References | Reference_title |
|---|---|
| The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants |
| Database_name | Phytozome |
|---|
Isoetes_taiwanensis
| References | Reference_title |
|---|---|
| Underwater CAM photosynthesis elucidated by Isoetes genome |
| Database_name | CoGe |
|---|
Azolla_filiculoides
| References | Reference_title |
|---|---|
| Fern genomes elucidate land plant evolution and cyanobacterial symbioses |
| Database_name | fernbase |
|---|
Salvinia_cucullata
| References | Reference_title |
|---|---|
| Fern genomes elucidate land plant evolution and cyanobacterial symbioses |
| Database_name | fernbase |
|---|
Alsophila_spinulosa
| References | Reference_title |
|---|---|
| The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence |
| Database_name | Figshare |
|---|
Adiantum_capillusveneris
| References | Reference_title |
|---|---|
| The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences |
| Database_name | Figshare |
|---|
Sequoiadendron_giganteum
| References | Reference_title |
|---|---|
| A Reference Genome Sequence for Giant Sequoia |
| Database_name | TreeGenes Database |
|---|
Abies_alba
| References | Reference_title |
|---|---|
| A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource |
| Database_name | TreeGenes Database |
|---|
Picea_abies
| References | Reference_title |
|---|---|
| The Norway spruce genome sequence and conifer genome evolution |
| Database_name | Plantgenie |
|---|
Pinus_taeda
| References | Reference_title |
|---|---|
| Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies |
| Database_name | Plantgenie |
|---|
Ginkgo_biloba
Gnetum_montanum
| References | Reference_title |
|---|---|
| A genome for gnetophytes and early evolution of seed plan |
| Database_name | DRYAD |
|---|
Welwitschia_mirabilis
| References | Reference_title |
|---|---|
| The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts |
| Database_name | CNSA |
|---|
Cycas_panzhihuaensis
| References | Reference_title |
|---|---|
| The Cycas genome and the early evolution of seed plants |
| Database_name | CNGB |
|---|
Zea_mays
Apostasia_shenzhenica
Coffea_humblotiana
Glycine_max
Glycine_soja
Spatholobus_suberectus
Eucalyptus_grandis
Theobroma_cacao
Stephania_japonica
Anthoceros_angustus
Ginkgo_biloba